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The Marseille Cancer Research Center celebrates its 50th anniversary ! -

The Cibi platform offers a wide range of expertise in bioinformatics
(large scale data integration, development of specific analysis)
and develops state-of-the art bioinformatics pipelines.
We also develop custom-made biological databases for data storage and processing.
Ghislain Bidaut, Platform Manager

Skills and Services

  • NGS (Next Generation Sequencing) data analysis and integration (ChIP-Seq, RNA-Seq, single cell RNA-Seq, Genetic Variants analysis for research and cancer diagnostics)
  • Flow and mass cytometry data analysis
  • Proteomics data analysis
  • Bioinformatics pipelines and database development (Python, R, Bioconductor, RShiny, Django, PostgreSQL, etc…)
  • Projects collaboration (INCa, ANR, ARC, etc…)

Our Pipelines

Trainings

  • We would also underline that we are welcoming applications for Master and engineering school internships.
the Team publications
Jan 2017 PloS one

HTS-Net: An integrated regulome-interactome approach for establishing network regulation models in high-throughput screenings.

Rioualen C, Da Costa Q, Chetrit B, Charafe-Jauffret E, Ginestier C, Bidaut G

Jun 2021 Proceedings of the National Academy of Sciences of the United States of America

High-dimensional mass cytometry analysis of NK cell alterations in AML identifies a subgroup with adverse clinical outcome.

Chretien AS, Devillier R, Granjeaud S, Cordier C, Demerle C, Salem N, Wlosik J, Orlanducci F, Gorvel L, Fattori S, Hospital MA, Pakradouni J, Gregori E, Paul M, Rochigneux P, Pagliardini T, Morey M, Fauriat C, Dulphy N, Toubert A, Luche H, Malissen M, Blaise D, Nunès JA, Vey N, Olive D

Jul 2017 Oncotarget

NKp30 expression is a prognostic immune biomarker for stratification of patients with intermediate-risk acute myeloid leukemia.

Chretien AS, Fauriat C, Orlanducci F, Rey J, Borg GB, Gautherot E, Granjeaud S, Demerle C, Hamel JF, Cerwenka A, von Strandmann EP, Ifrah N, Lacombe C, Cornillet-Lefebvre P, Delaunay J, Toubert A, Arnoulet C, Vey N, Olive D

Jan 2022 Journal of clinical medicine

Exploratory Study on Application of MALDI-TOF-MS to Detect SARS-CoV-2 Infection in Human Saliva.

Costa MM, Martin H, Estellon B, Dupé FX, Saby F, Benoit N, Tissot-Dupont H, Million M, Pradines B, Granjeaud S, Almeras L

Apr 2022 The Journal of physiology

Time-limited alterations in cortical activity of a knock-in mice model of KCNQ2-related developmental and epileptic encephalopathy.

Biba N, Becq H, Pallesi-Pocachard E, Sarno S, Granjeaud S, Montheil A, Kurz M, Villard L, Milh M, Santini PL, Aniksztejn L